JCU Barramundi Genomics Research
A data repository for barramundi related projects from the aquaculture genetics group at JCU.
    Data Record Details
    Data record related to this publication JCU Barramundi Genomics Research
    Data Publication title JCU Barramundi Genomics Research
  • Description
    A data repository for barramundi related projects from the aquaculture genetics group at JCU.
  • Other Descriptors
    • Descriptor
    • Descriptor type
  • Data type dataset
  • Keywords
    • aquaculture
    • Asian seabass
    • barramundi
    • cyp19a1
    • dmrt1
    • epigenetics
    • estradiol 2
    • genomics
    • genomic selection
    • genomic prediction
    • axiom
    • SNPs
    • EBVs
    • GRM
    • Lates calcarifer
    • methylation
    • nutrigenomics
    • phenotypic plasticity
    • RNA-seq
    • sex change
    • sexual development
    • slow-release implants
    • temperature
  • Funding source
    • Australian Research Council
    • Cooperative Research Centres Projects (CRCP) Grants
  • Research grant(s)/Scheme name(s)
    • - ARC Linkage LP130100007
    • - CRC-P Rapid iteration selective breeding: Australia's fish to feed the world (GA919)
  • Research themes
    Industries and Economies in the Tropics
    FoR Codes (*)
    SEO Codes
    Specify spatial or temporal setting of the data
    Temporal (time) coverage
  • Start Date
  • End Date
  • Time Period
    Spatial (location) coverage
  • Locations
    Data Locations

    Type Location Notes
    Physical Location QCIF Collection Q1116
    The Data Manager is: David Jones
    College or Centre College of Science & Engineering
    Access conditions Conditional: Contact researchdata@jcu.edu.au to request access to this data.
  • Alternative access conditions
  • Data record size 5.457 TiB
  • Related publications
      Name Jerry, Dean R., Jones, David B., Lillehammer, Marie, Massault, Cecile, Loughnan, Shannon, Cate, Holly S., Harrison, Paul J., Strugnell, Jan M., Zenger, Kyall R., and Robinson, Nicholas A. (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549. 737761.
    • URL https://doi.org/10.1016/j.aquaculture.2021.737761
    • Notes
    • Name Budd, A. M., Robins, J. B., Whybird, O., and Jerry, D. R. (2022). Epigenetics underpins phenotypic plasticity of protandrous sex change in fish. Ecology and Evolution, 12, e8730.
    • URL https://doi.org/10.1002/ece3.8730
    • Notes
    • Name Banh, Quyen Q. T., Guppy, Jarrod L., Domingos, Jose A., Budd, Alyssa M., Pinto, Ricardo C. C., Marc, Adrien F., and Jerry, Dean R. (2021) Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes. Aquaculture, 539. 736601
    • URL http://doi.org/10.1016/j.aquaculture.2021.736601
    • Notes
    • Name Budd, Alyssa M., Banh, Quyen Q., Domingos, Jose A., and Jerry, Dean R. (2015) Sex control in fish: approaches, challenges and opportunities for aquaculture. Journal of Marine Science and Engineering, 3 (2). jmse3020329. pp. 329-355.
    • URL http://dx.doi.org/10.3390/jmse3020329
    • Notes Open Access
    • Name Domingos, Jose A., Budd, Alyssa M., Banh, Quyen Q., Goldsbury, Julie A., Zenger, Kyall R., and Jerry, Dean R. (2018) Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi. PLoS ONE, 13 (9). e0204182.
    • URL https://doi.org/10.1371/journal.pone.0204182
    • Notes Open Access
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    • Notes
    Citation Jerry, Dean (2022): JCU Barramundi Genomics Research. James Cook University. https://doi.org/10.25903/4qjj-t894