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Silver-Lipped Pearl Oyster Advanced Animal Breeding (POAAB)

Data related to a series of ARC Linkage grants focusing on developing advanced genetic breeding programs for the silver-lipped pearl oyster, Pinctada maxima.
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    Data Record Details
    Data record related to this publication Silver-Lipped Pearl Oyster Advanced Animal Breeding (POAAB)
    Data Publication title Silver-Lipped Pearl Oyster Advanced Animal Breeding (POAAB)
  • Description

    Data related to a series of ARC Linkage grants focusing on developing advanced genetic breeding programs for the silver-lipped pearl oyster, Pinctada maxima.

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  • Other Descriptors
    • Descriptor
      • Descriptor type
    • Data type dataset
  • Keywords
    • animal breeding
    • aquaculture
    • biomineralisation
    • bivalves
    • genetic improvement
    • genetic linkage mapping
    • genome mapping
    • genome structure
    • genome-wide association study
    • genomic selection
    • microsatellite
    • pearl formation
    • pearl oyster
    • pearl oyster culture
    • pearls
    • Pinctada margaritifera
    • Pinctada maxima
    • quantitative genetics
    • quantitative trait loci
    • shell growth
    • single nucleotide polymorphism
    • transcriptome sequencing
    • xenograft
  • Funding source
    • Australian Research Council
  • Research grant(s)/Scheme name(s)
    • - ARC Linkage LP0560298
    • - ARC Linkage LP140101001
    • Research themes
    Industries and Economies in the Tropics
    FoR Codes (*)
    SEO Codes
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    Specify spatial or temporal setting of the data
    Temporal (time) coverage
  • Start Date
  • End Date
    • Time Period
    Spatial (location) coverage
  • Locations
- Data
    Data Locations

    Type Location Notes
    Physical Location QCIF Collection Q0219
    The Data Manager is: David Jones
    College or Centre College of Science & Engineering
    Access conditions Conditional: Contact researchdata@jcu.edu.au to request access to this data.
  • Alternative access conditions
    • Data record size 3.357 TiB
- Related resources
  • Related publications
      Name Zenger, Kyall R., Khatkar, Mehar S., Jones, David B., Khalilisamani, Nima, Jerry, Dean R., and Raadsma, Herman W. (2019) Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters. Frontiers in Genetics, 9. 693.
    • URL http://doi.org/10.3389/fgene.2018.00693
    • Notes
      • Name Lapico, Adrian, Sankupellay, Mangalam, Cianciullo, Louis, Myers, Trina, Konovalov, Dmitry A., Jerry, Dean R., Toole, Preston, Jones, David B., and Zenger, Kyall R. (2019) Using image processing to automatically measure pearl oyster size for selective breeding. In: Proceedings of the International Conference on Digital Image Computing. pp. 90-97. From: DICTA 2019: International Conference on Digital Image Computing: Techniques and Applications, 2-4 December 2019, Perth, WA, Australia.
    • URL https://doi.org/10.1109/DICTA47822.2019.8945902
    • Notes
      • Name Khatkar, M.S., Jones, D.B., Toole, P.B., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Reconstruction of unknown donor genome from chimeric pearl sac tissue and host genotypes in pinctada maxima. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics. pp. 445-448. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.
    • URL http://www.aaabg.org/aaabghome/AAABG22papers/102Khatkar22445.pdf
    • Notes AAABG Proceedings
      • Name Jones, D.B., Toole, P.B., Khatkar, M.S., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Developing a genomic selection breeding program for complex pearl colour traits within the silver-lipped pearl oyster. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 537-540. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.
    • URL http://www.aaabg.org/aaabghome/AAABG22papers/125Jones22537.pdf
    • Notes AAABG Proceedings
      • Name Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Determining genetic contributions to host oyster shell growth: quantitative trait loci and genetic association analysis for the silver-lipped pearl oyster, Pinctada maxima. Aquaculture, 434. pp. 367-375.
    • URL http://dx.doi.org/10.1016/j.aquaculture.2014.08.040
    • Notes
      • Name Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Quantitative trait loci and genetic association analysis reveals insights into complex pearl quality traits in donor silver-lipped pearl oysters. Aquaculture, 434. pp. 476-485.
    • URL http://dx.doi.org/10.1016/j.aquaculture.2014.08.038
    • Notes
      • Name Jones, David B., Jerry, Dean R., Forêt, Sylvain, Konovalov, Dmitry A., and Zenger, Kyall R. (2013) Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Marine Biotechnology, 15 (6). pp. 647-658.
    • URL http://dx.doi.org/10.1007/s10126-013-9514-3
    • Notes
      • Name Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2013) A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection. BMC Genomics, 14. 810. pp. 1-18.
    • URL http://dx.doi.org/10.1186/1471-2164-14-810
    • Notes Open Access
      • Name Jones, David Byron (2013) Genomic resources and genetic dissection of complex quantitative traits in the silver-lipped pearl oyster, Pinctada maxima. PhD thesis, James Cook University.
    • URL https://researchonline.jcu.edu.au/39974/
    • Notes Open Access
      • Name McGinty, E.L., Zenger, K.R., Jones, D.B., and Jerry, D.R. (2012) Transcriptome analysis of biomineralisation-related genes within the pearl sac: host and donor oyster contribution. Marine Genomics, 5. pp. 27-33.
    • URL http://dx.doi.org/10.1016/j.margen.2011.08.006
    • Notes
      • Name Jones, D.B., Zenger, K.R., and Jerry, D.R. (2011) In silico whole-genome EST analysis reveals 2322 novel microsatellites for the silver-lipped pearl oyster, Pinctada maxima. Marine Genomics, 4 (4). pp. 287-290.
    • URL http://dx.doi.org/10.1016/j.margen.2011.06.007
    • Notes
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- Citation
    Citation Jones, David (2022): Silver-Lipped Pearl Oyster Advanced Animal Breeding (POAAB). James Cook University. https://doi.org/10.25903/kv35-q944