Research Data JCU - Reanalysis shows there is not an extreme decline effect in fish ocean acidification studies

Reanalysis shows there is not an extreme decline effect in fish ocean acidification studies - PLoS Biology

This data record is a reanalysis of data related to the publication "Meta-analysis reveals an extreme “decline effect” in the impacts of ocean acidification on fish behavior" by Jeff C. Clements, Josefin Sundin, Timothy D. Clark, Fredrik Jutfelt (2022) https://doi.org/10.1371/journal.pbio.3001511.

The data record includes 5 x R markdown files.
1) Rerun of the original analysis relating to the Clements et al. publication,
2) New analysis of the corrected and complete data set,
3) New analysis of the corrected and complete data using 0.1 to replace zeros in percentage and 0.01 to replace zeros in proportional data,
4) New analysis of the corrected and complete data using 1 to replace zeros in percentage data and 0.01 to replace zeros in proportional data,
5) New analysis of the corrected and complete data using 0.1 to replace zeros in percentage and 0.01 to replace zeros in proportional data, as well as the removal of publications in the original analysis that use levels of CO2 below 800 µatm.

The excel data file relating to 1) Rerun of the original analysis is available with the original publication. There are 4 data files in this repository that match to R markdown files 2-5.

Software/equipment used to create/collect the data: Microsoft Excel

Software/equipment used to manipulate/analyse the data: R Version 4.1.0 and RStudio Version 2022.07.0

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Data Record Details

Data record related to this publication Reanalysis shows the extreme decline effect does not exist in fish ocean acidification studies - PLoS Biology

Data Publication title Reanalysis shows there is not an extreme decline effect in fish ocean acidification studies - PLoS Biology

Description

The excel data file relating to 1) Rerun of the original analysis is available with the original publication. There are 4 data files in this repository that match to R markdown files 2-5.

Software/equipment used to create/collect the data: Microsoft Excel

Software/equipment used to manipulate/analyse the data: R Version 4.1.0 and RStudio Version 2022.07.0

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Data type dataset

Keywords

ocean acidification
climate change
meta-analysis
fish
behaviour
ARC Centre of Excellence for Coral Reef Studies

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Research themes

Tropical Ecosystems, Conservation and Climate Change

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Data Locations

Type	Location	Notes
Attachment	Clements-et-al-rerun-original.html	This is the R markdown created from the original S2 data supplementary to the manuscript
Attachment	Clements-et-al-rerun-final-corrected-and-complete 0.1 and 0.001 remove CO2 under 800.html	R markdown created using "Data set corrected 0.1 and 0.001 and complete under 800 excluded.xlsx"
Attachment	Clements-et-al-rerun-final-corrected-and-complete 0.1 and 0.001.html	R markdown created using "Data set corrected 0.1 and 0.001 and complete.xlsx"
Attachment	Clements-et-al-rerun-final-corrected-and-complete 1 for smallest.html	R markdown created using "Data set corrected 1 for smallest % value and complete.xlsx
Attachment	Clements-et-al-rerun-final-corrected-and-complete.html	R markdown created using "Data set corrected and complete.xlsx"
Attachment	Data set corrected and complete.xlsx	This data set was used for R markdown "Clements-et-al-rerun-final-corrected-and-complete.html"
Attachment	Data set corrected 0.1 and 0.001 and complete under 800 excluded.xlsx	This data set was used for R markdown " Clements-et-al-rerun-final-corrected-and-complete 0.1 and 0.001 remove CO2 under 800.html"
Attachment	Data set corrected 1 for smallest % value and complete.xlsx	This data set was used for R markdown "Clements-et-al-rerun-final-corrected-and-complete 1 for smallest.html"
Attachment	Data set corrected 0.1 and 0.001 and complete.xlsx	This data set was used for R markdown "Clements-et-al-rerun-final-corrected-and-complete 0.1 and 0.001.html"

The Data Manager is: Philip Munday

College or Centre ARC Centre of Excellence for Coral Reef Studies

Access conditions Open: free access under license

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Name Reanalysis shows the extreme decline effect does not exist in fish ocean acidification studies

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The data will be licensed under CC BY 4.0: Attribution 4.0 International

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Data owners

James Cook University

- Citation

Citation Munday, Philip (2022): Reanalysis shows there is not an extreme decline effect in fish ocean acidification studies - PLoS Biology. James Cook University. https://doi.org/10.25903/jw8m-9007